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dc.contributor.advisorSetty, Subba Rao G
dc.contributor.authorThankachan, Jerrin Mathew
dc.date.accessioned2023-12-01T09:01:57Z
dc.date.available2023-12-01T09:01:57Z
dc.date.submitted2023
dc.identifier.urihttps://etd.iisc.ac.in/handle/2005/6308
dc.description.abstractThe endomembrane system and their associated membrane trafficking are fundamental features of eukaryotic cell biology. These processes are regulated by small GTP-binding proteins that acts as molecular switches to control signalling based on the type of bound nucleotide. Small GTPases function to exert spatial and temporal regulation on intracellular trafficking. Amongst the Ras superfamily of small GTPases, the Rab subfamily consists of around 70 members. Rabs serve as markers for membrane/organelle identity and function as regulatory factors in vesicle transport. In this study, we attempted to characterize the endosomal function of the small GTPase Rab14. Rab14 was identified as a low molecular weight GTP-binding protein (Elferink et al., 1992). This protein localizes to trans-Golgi, early and recycling endosomes and has been shown to control the transport from the Golgi and endosomes. Rab14 has been implicated in multiple cellular processes including development (Ueno et al., 2011) and immune response. Multiple studies have described the mechanism of Rab14 function in endosomal recycling. Here, we attempted to investigate its function in the biogenesis of tubular recycling endosomes (TREs). Objective : Studying the regulation of recycling endosomes by Rab14 Rab14 has been shown to localize to endosomal compartments in addition to trans-Golgi (Junutula et al., 2004). Although it is involved in endocytic recycling, its precise role in regulating the recycling of cargo such as transferrin has not been completely understood. Expression of GFP-Rab14 in HeLa cells showed its localization to early endosomes (EEA1) and recycling endosomes (TfR). Further, constitutive active mutant of GFP-Rab14 also showed its localization to these compartments. However, the dominant negative mutant of GFP-Rab14 did not show its effect as expected but localized to trans-Golgi as shown by other groups. Multiple Rabs are known to localize to endosomal compartments. However, whether and how Rab14 regulates other endosomal structures labelled by Rabs have not been well studied. To study the effect of Rab14 on endo-lysosomal pathway, we co-expressed GFP-Rab14WT and its mutants with mCherry-tagged Rab11A or Rab22A to represent REs and Rab7A to mark late endosomes/lysosomes. Our studies show that Rab14 co-localizes highly with RE localized Rabs Rab11A and Rab22A, and to a lesser extent with Rab7A. Consistently, overexpression of constitutive active mutant of Rab14 causes increased co localization with co-expressed Rabs. To study the possible regulation of Rab14 on recycling endosomes, we employed a siRNA-mediated knockdown approach. Depletion of Rab14 levels did not significantly affect the length or the number of tubules labelled by the kinesin-3 motor KIF13A or the small GTPase Rab22A. We also checked the status of the CIE cargo, CD147, which traffics through tubular recycling endosomes. However, we noticed that Rab14 knockdown significantly decreased the percentage of cells showing endogenous Rab11A tubules. Interestingly, we also observed that Rab11A staining of Rab14-depleted cells under methanol fixation conditions displayed enlarged Rab11A vesicular structures, which was not observed in control cells. Rab11A tubules can carry both CIE as well as CME cargo. To confirm if Rab11A-labelled tubules were broadly affected, we also assessed the status of CIE marker CD55 as well as CD147 in Rab14-depleted conditions. To study if Rab11A knockdown can affect Rab14 localization or Rab14 compartments, we knocked down Rab11A and expressed GFP-tagged Rab14. However, we did not observe any significant effect of Rab11A knockdown on Rab14. These observations suggest that Rab14 possibly may work upstream and/or regulate a subset of Rab11A-positive tubules. For recycling of cargo to the plasma membrane, endosomal tubules are either generated from early endosomes or from the endocytic recycling compartment (ERC). To investigate which of these two spatially distributed REs are regulated by Rab14, we stained Rab14 knockdown cells with a combination of cargo (marked by TfR)/organelle markers to study if Rab14 regulates Rab11A-dependent cargo localization and transport from early endosomes to recycling endosomes or recycling towards the plasma membrane. Our results show that Rab14 does not significantly affect cargo localization and transport to and from Rab11A endosomes, indicating the possibility of alternate redundant or parallel pathways to ameliorate block in the Rab14-dependent recycling pathway. We also tested if Rab14 levels may affect late endosomal-lysosomal compartments using markers specific for late endosomal and lysosomal markers. Our results do not show significant changes in endo-lysosomes suggesting that Rab14 is primarily associated with early and recycling endosomes and may not directly be involved in regulating late endosomal-lysosomal compartments. A number of molecules have been shown in literature to regulate Rab11A tubules. Based on literature and our observations, we hypothesized that Rab14 may recruit sorting nexins, probably SNX4 or SNX1 (which are known membrane sculpting and remodelling molecules), to modulate Rab11A endosome tubules downstream. We overexpressed SNX4 and SNX1 in Rab14 depleted cells and made observations on its cellular distribution and localization. Our results suggest that Rab14 may work through different mechanisms or effectors to modulate Rab11A tubules. Overall, our results suggest that Rab14 acts upstream of Rab11A and regulates Rab11A endosomal compartments or a subset of Rab11A structures.en_US
dc.language.isoen_USen_US
dc.relation.ispartofseries;ET00320
dc.rightsI grant Indian Institute of Science the right to archive and to make available my thesis or dissertation in whole or in part in all forms of media, now hereafter known. I retain all proprietary rights, such as patent rights. I also retain the right to use in future works (such as articles or books) all or part of this thesis or dissertationen_US
dc.subjectGuanosine triphosphateen_US
dc.subjectRab14en_US
dc.subjectendosomesen_US
dc.subjectsmall GTP-binding proteinsen_US
dc.subject.classificationResearch Subject Categories::NATURAL SCIENCES::Biology::Cell and molecular biologyen_US
dc.titleStudying the role of small GTPase Rab14 in the regulation of endosomal functionen_US
dc.typeThesisen_US
dc.degree.namePhDen_US
dc.degree.levelDoctoralen_US
dc.degree.grantorIndian Institute of Scienceen_US
dc.degree.disciplineFaculty of Scienceen_US


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