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dc.contributor.advisorMuniyappa, K
dc.contributor.authorPrasad, Deepika
dc.date.accessioned2021-09-21T09:14:31Z
dc.date.available2021-09-21T09:14:31Z
dc.date.submitted2018
dc.identifier.urihttps://etd.iisc.ac.in/handle/2005/5316
dc.description.abstractE. coli RecA is a multifunctional protein known to be associated with the cell membrane, forming foci often located at the cell poles, which gets redistributed along the length of the cell during SOS response. Several lines of evidence suggest that RecA foci is occluded from the nucleoid during SOS response and positioned at the polar-proximal end of the cell, implicating RecA-membrane interactions. Compared to the E. coli RecA paradigm, very little is known about the in vivo properties of mycobacterial RecA proteins. Furthermore, the distribution of RecA in the cell or its interaction with the constituents of the mycobacterial cell membrane and its role in cell physiology remains to be investigated. The mycobacterial cell wall is a rigid structure that contains distinctive lipids and glycolipids, including mycolic acids, phosphatidyl inositol mannosides, phthiocerol dimycocerosates and lipoglycans. In this study, we demonstrate that mycobacterial RecA proteins specifically interact with phosphatidylinositol (PI) and cardiolipin (CL) among other acidic lipids. Interestingly, these interactions had no discernible effect on the ability of RecA proteins to bind single-strand DNA or ATP. However, PI and CL abrogated the DNA-dependent ATP activity of mycobacterial as well as E. coli RecA proteins. Further, RecA-phospholipid interaction had no significant effect on their capacity to promote strand exchange between linear double-stranded and single-stranded DNA. Furthermore, GFP-tagged RecA foci were localized at the polar ends, which are redistributed in the cell upon DNA damage and then exclusively associated with the nucleoid. The interaction of RecA protein with CL and PG, which represent two of the three major phospholipids of the M. smegmatis cell membrane, may be physiologically relevant because it provides a possible mechanism by which the membrane components may regulate RecA levels and function during the SOS response and recombinational DNA repair. Altogether, these and other findings indicate that the interaction of RecA proteins with CL and PI, the major acidic constituents of the mycobacterial membrane, may be physiologically relevant, as they provide a possible mechanism for storage of RecA in the cell and regulate recombinational DNA repair during the SOS response. This work sets the stage for future studies on the broader role of the mycobacterial cell membrane and provides a framework for further investigations into the role of cell membrane components in RecA function.en_US
dc.language.isoen_USen_US
dc.relation.ispartofseries;G29383
dc.rightsI grant Indian Institute of Science the right to archive and to make available my thesis or dissertation in whole or in part in all forms of media, now hereafter known. I retain all proprietary rights, such as patent rights. I also retain the right to use in future works (such as articles or books) all or part of this thesis or dissertationen_US
dc.subjectE colien_US
dc.subjectRecAen_US
dc.subjectphosphatidylinositolen_US
dc.subjectcardiolipinen_US
dc.subjectmycobacteriaen_US
dc.subject.classificationResearch Subject Categories::NATURAL SCIENCES::Chemistry::Biochemistryen_US
dc.titleRegulation of RecA nucleoprotein filament stability by RecX and the effects of RecA-membrane interaction on the activities of RecA in mycobacteriaen_US
dc.typeThesisen_US
dc.degree.namePhDen_US
dc.degree.levelDoctoralen_US
dc.degree.grantorIndian Institute of Scienceen_US
dc.degree.disciplineFaculty of Scienceen_US


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